Publications & Presentations

Papers in refereed journals

Phylogenetic distances are encoded in networks of interacting pathways Mazurie A, Bonchev D, Schwikowski B, Buck GA Accepted in Bioinformaticspubmed | pdf | link
Path-a-Way: a strategy for network analysis of microarray data Arasappan D, Mazurie A, Alves J, Bonchev D, Buck GA Accepted, Conf Proc IEEE, 2008pubmed | pdf | link
Integrating genome-scale data for gene essentiality prediction Roberts SB, Mazurie A, Buck GA Chemistry & Biodiversity, 2007 4(11):2618-2630pubmed | pdf | link

An evolutionary and functional assessment of regulatory network motifs Mazurie A, Bottani S, Vergassola M Genome Biology, 2005 6(4):R35pubmed | pdf | link
This article has been evaluated by the Faculty of 1000. See the first and the second evaluation.
Gene networks inference using dynamic bayesian networks Perrin BE, Ralaivola L, Mazurie A, Bottani S, Mallet J, d'Alché-Buc F Bioinformatics, 2003;19 Suppl 2:II138-II148pubmed | pdf | link
A novel sensitive microarray approach for differential screening using probes labelled with two different radioelements Salin H, Vujasinovic T, Mazurie A, Maitrejean S, Menini C, Mallet J, Dumas S Nucleic Acids Res, 2002 Feb 15;30(4):e17pubmed | pdf | link

Legend: Review Research Method Software

Metabolic networks and the phylogeny of species Mazurie A, Bonchev D, Buck GA In 'Analysis of biomolecular structures and interaction networks', Kuznetsov VA editor, CRC/Taylor and Francis (2008)
Genetic networks: between theory and experimentation Bottani S, Mazurie A In 'Complex population dynamics: nonlinear modeling in ecology, epidemiology and genetics', Blasius B, Kurths J, and Stone L editors, World Scientific, pp. 215-236 (2007)
A dynamic model of gene regulatory networks based on inertia principle d'Alché-Buc F, Lahaye PJ, Perrin BE, Ralaivola L, Vujasinovic T, Mazurie A, Bottani S In 'Bioinformatics using Computational Intelligence Paradigms', Seiffert U editor, Springer, pp. 93-118 (2005)
Réseaux bayésiens dynamiques pour l'inférence de structure de réseaux de régulation Ralaivola L, Perrin BE, d'Alché-Buc F, Mazurie A, Bottani S In 'Informatique pour l'analyse du transcriptome', Boulicaut JF and Gandrillon O editors, Lavoisier, pp. 291-319 (2004)

Inférence de réseaux d'interactions génique à l'aide de réseaux bayésiens dynamiques Ralaivola L, Perrin BE, d'Alché-Buc F, Mazurie A, Bottani S In Journées Post-Génomiques de la Doua, La Doua, France, 2003.