All news from Mazurie's WebSite http://aurelien.mazurie.oenone.net/ Thu, 25 Sep 2008 23:22:56 +0100 FeedCreator 1.7.2 index.php?p=research/articles&l=en A new review paper, entitled 'Integrating genome-scale data for gene essentiality prediction' has been accepted in Chemistry and Biodiversity. Tue, 24 Apr 2007 22:00:00 +0100 index.php?p=research/tools/metaclassify&l=en A new release of the MetaClassify tool (v1.3) is now available Wed, 20 Dec 2006 23:00:00 +0100 http://www.systemsbiology.fr/ I join today the Systems Biology Group of the Institut Pasteur in Paris, France Tue, 31 Oct 2006 23:00:00 +0100 index.php?p=research/tools/qprepare&l=en If you have access to a cluster of computers, qprepare will help you to submit job arrays. Thu, 17 Aug 2006 22:00:00 +0100 index.php?p=research/tools/semanticdistance&l=en A new release of the SemanticDistance library (v1.1) is available. Mon, 14 Aug 2006 22:00:00 +0100 index.php?p=research/tools/tab2arff&l=en Utility script to manage ARFF-formated Weka datasets as tab-delimited files, simplifying their edition, merging and splitting. Thu, 20 Jul 2006 22:00:00 +0100 index.php?p=research/tools/fisher&l=en Library for the statistical assessment of an over- or under-representation of a property in a list of objects using Fisher's exact test. Fri, 26 May 2006 22:00:00 +0100 index.php?p=research/tools/semanticdistance&l=en This new version of the library now allow to deal with any ontology; utility scripts for calculating a distance between Gene Ontology and EC terms are provided. Wed, 01 Mar 2006 23:00:00 +0100 index.php?p=research/tools/metaweka&l=en This version have many improvements on the previous one. You can now use meta-classifiers, extract more type of scores, use previously saved models or previously saved reports. Tue, 24 Jan 2006 23:00:00 +0100 index.php?p=research/tools/metaweka&l=en Weka is a very powerful toolbox giving access to several state-of-the-art data mining algorithms that you can apply on your dataset. One of the problem usually encountered with Weka is to choose the 'best' algorithm, the one able to find patterns with the higher accuracy, support, or any other descriptor you have in mind. MetaWeka has been made to help you to solve this problem. Thu, 08 Dec 2005 23:00:00 +0100 index.php?p=research/tools/mutationshunter&l=en MutationsHunter is a wrapper driving three different softwares (InParanoid, FASTA and PAML) in order to calculate a dN/dS ratio (ratio between non-synonymous and synonymous substitutions rates) between diverging coding sequences (ie. orthologs or paralogs genes). Fri, 21 Oct 2005 22:00:00 +0100 index.php?p=research/tools/significantattributes&l=en SignificantAttributes is a software giving you statistical scores about the over- or under-abundance of attributes in an entity list. Wed, 24 Aug 2005 22:00:00 +0100 http://www.facultyof1000.com/article/15833122 Our article, 'An evolutionary and functional assessment of regulatory network motifs', has been evaluated by a Faculty of 1000 member. Wed, 25 May 2005 22:00:00 +0100 index.php?p=research&l=en I start today a postdoctoral fellow at the Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond VA. Sun, 22 May 2005 22:00:00 +0100 index.php?p=research/articles&l=en A new article, entitled 'An evolutionary and functional assessment of regulatory network motifs' has been published in Genome Biology. The .pdf is available on my website. Thu, 24 Mar 2005 23:00:00 +0100 index.php?p=research/articles&l=en The 'Publications' page of the site is now splitted into three parts : 'Papers', 'Book chapters' and 'Conferences'. Wed, 23 Mar 2005 23:00:00 +0100 index.php?p=research/thesis&l=en I defended my Ph.D. on the 10th Jan 2005, in Paris (Pierre & Marie Curie University). The title of the thesis is "From genes to gene networks : exploitation of transcriptome data, inference and characterization of regulatory structures". An abstract, the manuscript and the slides of the presentation (both last in french) are available. Sun, 09 Jan 2005 23:00:00 +0100